Test-drive the GATK tools and Best Practices pipelines on Terra
Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.
I posted the following message in this discuss http://gatkforums.broadinstitute.org/discussion/comment/16107/ but it seems that it might have slipped off the radar. I thought perhaps I should start a new one. Thank you.
Not sure if I have done something wrong here. After downloading version 3.1 from the github, I followed the instruction above (mvn verify -P!queue) to build it. However, when I ran the command below to check the version, it showed a much earlier one:
$ java -jar target/GenomeAnalysisTK.jar --version
Note that I have java 1.7 and I have not set up the IntelliJ.
I was given some vcf files created with version3.1 and I'll like to do some comparison works. Thank you.
PS: Just downloaded the version 3.2 source and compiled it. It also shows the same version 1.2-48-g442d33b