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GATK FOR FINDING COPY NUMBER VARIATIONS

Hi,

I am interested in finding copy number variation in my samples. I have looked for SNPS and INDELS with GATK UnifiedGenoTyper (still have to use it with haplotypecaller). Is there a walker to find CNV's (duplications or deletions) in GATK?

Hope to hear from you soon.

Regards
Varun

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