If you happen to see a question you know the answer to, please do chime in and help your fellow community members. We encourage our fourm members to be more involved, jump in and help out your fellow researchers with their questions. GATK forum is a community forum and helping each other with using GATK tools and research is the cornerstone of our success as a genomics research community.We appreciate your help!
Test-drive the GATK tools and Best Practices pipelines on Terra
Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.
What do I need to do before attending a workshop hands-on session?
So you're going to a GATK workshop, and you've been selected to participate in a hands-on session? Fantastic! We're looking forward to walking you through some exercises that will help you master the tools. However -- in order to make the best of the time we have together, we'd like to ask you to come prepared. Specifically, if the workshop hosts are not providing machines and you have been asked to bring your own laptop, please complete the following steps:
- Download and install all necessary software as described in this tutorial.
Note that if you are a Mac user, you may need to install Apple's XCode Tools, which are free but fairly large, so plan ahead because it can take a loooong time to download them if your connection is anything less than super-fast.
- Download the tutorial bundle from the link provided by the workshop organizers.
This will typically be provided by email two to three weeks before the date of the workshop.
At the start of the session, we'll give you handouts with a walkthrough of the session so you can follow along and take notes (highly recommended!).
With that, you should be all set. See you soon!