The Frontline Support team will be offline February 18 for President's Day but will be back February 19th. Thank you for your patience as we get to all of your questions!
parallel runs in genotypegvcfs ?
I am running HaplotypeCaller -ERC GVCF for a cohort in parallel per sample per chromosome and combined the data using CombineGVCFs across the cohort on per chromosome basis. Can I run the GenotypeGVCFs to call variants across the cohort in parallel on all samples but per chromosome basis? follow by combining the vcf files using CatVariants or CombineVariants?