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1000G_phase1.snps.high_confidence.hg19.vcf

humaasifhumaasif University of SaoPauloMember

is this 1000G_phase1.snps.high_confidence.hg19.vcf in GATK resource bundle is cancatenated version of vcf file on this link
ftp://ftp-trace.ncbi.nih.gov/1000genomes/ftp/release/20110521/

or How is this file generated
Actually i am looking for vcf files and bam files from African and European ancestry from 1000 genome data
Any help will be really appreciated

Answers

  • Geraldine_VdAuweraGeraldine_VdAuwera Cambridge, MAMember, Administrator, Broadie admin

    The file in our bundle is a subset of the 1000Genomes results that has been filtered to meet specific requirements, for use as a truth set in variant recalibration and comparative analyses. That is most probably not the file you want.

    We do not provide general-purpose data from the 1000Genomes project; for that you should ask the maintainers of the project data, either on their website or through NCBI.

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