Test-drive the GATK tools and Best Practices pipelines on Terra

Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.


humaasifhumaasif University of SaoPauloMember

is this 1000G_phase1.snps.high_confidence.hg19.vcf in GATK resource bundle is cancatenated version of vcf file on this link

or How is this file generated
Actually i am looking for vcf files and bam files from African and European ancestry from 1000 genome data
Any help will be really appreciated


  • Geraldine_VdAuweraGeraldine_VdAuwera Cambridge, MAMember, Administrator, Broadie admin

    The file in our bundle is a subset of the 1000Genomes results that has been filtered to meet specific requirements, for use as a truth set in variant recalibration and comparative analyses. That is most probably not the file you want.

    We do not provide general-purpose data from the 1000Genomes project; for that you should ask the maintainers of the project data, either on their website or through NCBI.

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