Test-drive the GATK tools and Best Practices pipelines on Terra
Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.
About the MAF file
Some downstream analysises need an MAF (mutation annotation format) file.
Can TCGA or other realted tools annotate the vcf files and reformat them into MAF format?
Another little question, I can't get any search result by the box upright. It always lets me go to the guide, although I am trying to find key words already mentioned in the forum.