Test-drive the GATK tools and Best Practices pipelines on Terra
Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.
which is the best way to see ALL the nucleotides in EVERY position of a target?
I would like to ask you which is the best way to see ALL the nucleotides in EVERY position of a target. I used EMIT_ALL_SITES option with UnifiedGenotyper but the output miss an information: I obtain the genotype and the coverage but no information about other possible nucleotides present but not called (for example 148 G and 2 T with genotype 0/0 and DP 150). Can you help me?
Thank you in advance