Test-drive the GATK tools and Best Practices pipelines on Terra
Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.
I have done the Pacio reads alignment with BWA-SW,and generate a .sam file,how can I tranfer the .sam to .bam with header?
I used samtools and picard ,but I could not gain a .bam with header.What the Addorreplacereadgroups parameter RGID,RGLB,RGPL,RGPU,RGSM should be with Pacbio data??