The Frontline Support team will be offline February 18 for President's Day but will be back February 19th. Thank you for your patience as we get to all of your questions!
From GATK 2.7 to 3.2, we noticed that the FILTER field changed using VariantRecalibration.
Previously, we had the filter names in regards to the model build by the VariantsRacalibration. Now it's either PASS or LOW_VSQLOD
Is there a way to have the ApplyRecalibration walker assign the tranche name as filter, ie
instead of only LOW_VSQLOD ?