Ai essayé hier,au-moins 5 fois,votre kit sans succès,ne recois que des tableaux sans données ?
Can you tell us what you tried and what error result you got?
I need more details to help you. Please post the command line you used and the output that was produced by the program.
If you are having difficulties expressing your problem in English, please ask a colleague for help. It is important that you give us precise information. Otherwise it is very difficult for us to help you.
I'm not familiar with the format of results produced by 23andMe, but .zip is just a generic file archive compression format. That is certainly not the data format expected by our analysis tools.
Are you doing a personal genome analysis by yourself? Did you receive any recommendations from 23andMe for doing this?
If possible, please post or link to the analysis protocol you are trying to follow.
I see. We'll try to help you, but first you need to learn some essential information that will enable you to process your data and set up your analysis properly. Please watch the video presentations listed here: http://www.broadinstitute.org/gatk/guide/events?id=3391
Also, if you open the .zip archive you received from 23andMe, and you post the list of files (with their extension names) I may be able to help you figure out which files you can use and how.
The file "genome_Eric_Wolff_Full_20140406044719.zip" is NOT a genome file. It is a compressed archive that may contain one or more files. You need to open this archive (typically you can just double-click on it) and see what are the files contained inside it.
23andMe data is not sequence data (which is what BAM format contains) but rather data from a genotyping array. The .txt file they've sent you is probably genotype data from their their version 4 array [1,2] and not the type of data GATK processes. I would suggest you first use a more consumer oriented tool such as those listed at:
There are scripts to convert 23andMe data into a more common format but I recommend you try basic analysis first, remembering of course not to take any healthcare and lifestyle decisions on the data without consulting a doctor to get results confirmed in a clinical lab.
@TechnicalVault is correct, what you have is not sequencing data and cannot be used for analysis with our tools. Please have a look at the links he indicated. Since you cannot use GATK, we cannot help you any further, sorry.
I have run your GATK Analysis Kit with my raw data from 23andme to become the results (Y-SNP´s,Autosomal and more).But i become by the start the indication samtools.exe don´t good working.I have doawnload samtools.exe new,but nothing better ?
I have download the genome data from 23andme but it´s with .zip and not with .bam,it´s perhaps the problem ? I have download samtools.exe but i become by start the programm that samtools.exe don´t want And than the programm Bam Analysis Kit go but i become a lot of errors and finally the 12 tabelles but not with results ?
J´ai télécharger mon genome de 23andme qui est en .zip mais pas en .bam,c´est peut-être le problème ? Ai également télécharger samtools.exe mais il ne fonctionne pas lors du déroulement du programme Bam Analysis Kit,recois beaucoup d´erreurs et finalement 12 tables sans aucun résultat ?
Thanks for the help.
Yes,i do my personal genome analysis...
Thanks for your help.
My genome file from 23andme is : genome_Eric_Wolff_Full_20140406044719.zip
I look all yours informations this week,perhaps i hope i can becoming tomorrow the results from an internet-buro ?
Ok,it´s what the specialist from computer buro have me say.The specialist make the test tomorow afternoon...Merci.
I ´m coming from the computer buro but no chance that the Bam Analysis Kit go while the datei is genome_Eric_Wolff_Full_2014046044719.txt not in .bam format ? I can´t a transformation do so what´s now the solution please ?
Ok,thanks for all informations.
I have become all my results with snpedia/promethease,thanks for this good solution !