Test-drive the GATK tools and Best Practices pipelines on Terra
Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.
How Can I Get strand Bias Imformation From Mutect?
Mutect does have filter for strand bias, but does not give strand imformation(like DP4 or other ) in its output .call file or .vcf file.
But sometimes I wanna check the strand distribution of the SNV called and have further filtering, I wonder how could I get such imformation?