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Varinat calling from Multisample RNAseq data???
we are working on 454 RNaseq data......we have RNAseq data of four different tissues from six different individuals.... we want to call variants from all these data in a one job....but as per your recommendation we have to run each tissue data from each individual separately...so my query is can we join them as per the DNAseq guidelines or we have to find out some another way to do this kind of analysis....
Please help us if you have any suggestions to do Multisample Variant calling from RNAseq data.....