Test-drive the GATK tools and Best Practices pipelines on Terra
Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.
can I strip out BD/BI stings after creating gvcf in the new 3.1 workflow?
I'm wondering if it's ok to remove the bd/bi tags after haplotypecaller creates the gvcf, the increase bam size is a problematic, the computional cost of recreating them in a 'just in case' scenario isn't as bad as the on disk cost of them so i'm wondering if they are not used after the first gvcf is created from individual samples.