We've moved!
This site is now read-only. You can find our new documentation site and support forum for posting questions here.
Be sure to read our welcome blog!

Possible Bug (Unable to retrieve result)

terroan92terroan92 United StatesMember

After running 'java -Xmx4g -jar GenomeAnalysisTK.jar -T VariantRecalibrator -input MEN0024-Tumor.vcf -R human_g1k_v37.fasta -tranchesFile output.tranches -nt 16 -recalFile output.recal -resource:hapmap,known=false,training=true,truth=true,prior=15.0 hapmap_3.3.b37.vcf -resource:omni,known=false,training=true,truth=false,prior=10.0 1000G_omni2.5.b37.vcf -resource:dpsnp,known=true,training=false,truth=false,prior=2.0 dbsnp_138.b37.vcf -an QD -an MQRankSum -an ReadPosRankSum -an FS -an DP -mode SNP >> test' from the command line I get an error message about being unable to retrieve results. Am I missing some necessary arguments?

Answers

Sign In or Register to comment.