We've moved!
This site is now read-only. You can find our new documentation site and support forum for posting questions here.
Be sure to read our welcome blog!

Why using recommended pipeline with the HaplotypeCaller is better than UnifiedGenotyper?

HaoWangHaoWang ShanghaiMember

I have found some recommendation in the forum,your GATK team says it's better to use pipeline with the HaplotypeCaller .Why?Besides,why HaplotypeCaller has no -glm SNP or -glm INDEL options?
plz tell me,thank you!

Best Answer


Sign In or Register to comment.