Test-drive the GATK tools and Best Practices pipelines on Terra
Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.
Nightly build source code
I was wondering if it is possible to obtain the source code that accompanies the nightly builds; looking at the protected github repository, it seems that the nightly builds are changing faster than the repository there.
My current issue is that I would like the "AD" annotation for homozygous referent samples coming from the GenotypeGVCFs tool. Reading the forum, I believe that this is currently fixed in the nightly builds. However, I have a couple of customizations (pending review) that I don't think are in the nightly builds just yet, so I would need the source to apply my changes and then build.
I realize that I'm asking for something VERY dangerous and completely unsupported; I'm just too darn impatient to wait for the next release .