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Test-drive the GATK tools and Best Practices pipelines on Terra
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Nightly build source code
I was wondering if it is possible to obtain the source code that accompanies the nightly builds; looking at the protected github repository, it seems that the nightly builds are changing faster than the repository there.
My current issue is that I would like the "AD" annotation for homozygous referent samples coming from the GenotypeGVCFs tool. Reading the forum, I believe that this is currently fixed in the nightly builds. However, I have a couple of customizations (pending review) that I don't think are in the nightly builds just yet, so I would need the source to apply my changes and then build.
I realize that I'm asking for something VERY dangerous and completely unsupported; I'm just too darn impatient to wait for the next release .