Test-drive the GATK tools and Best Practices pipelines on Terra
Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.
Add DP to --keepOriginalAC in SelectVariants
Would it be possible to add an option to keep the original read depth (DP) of a variant in the INFO field when subsetting multi-sample VCF files using SelectVariants. This is already implemented for AC, AF, and AN values (--keepOriginalAC).