Test-drive the GATK tools and Best Practices pipelines on Terra
Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.
I'm a master student in Yang Ming University, Taiwan. Recently I used GATK to extract variants for RNA-Seq data. Since I did not know whether I have correctly followed the steps, please be kindly to provide me with a RNA-Seq data and the associated filtering variant results.