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Extracting ONLY heterozygous sites from vcf
I'm trying to extract only heterozygous sites from a file.
I see there is an option --genotypeFilterExpression and -select 'vc.getGenotype("SampleID").isHet()' but I'm confused about usage.
-select 'vc.getGenotype("mysample").isHet()' with the select variants, but nothing happened.
Is it a two step process?
Its noteworthy I'm working with a single sample vcf....