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scatter-gather for BaseRecalibrator
I'm trying to figure out whether BaseRecalibrator requires a custom gather function in GATK 3.1-1? Can I just sent the .scatterCount property and will GATK gather things appropriately? Or do I need to use a custom gatherer? If so, has anyone developed on? I see online for BQSR but I'm not sure if that's the same thing as BaseRecalbrator.
Thanks (from a newbie)