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Contig contradiction

maurimymaurimy FinlandMember

Hello,

I have such a basic question because I am beginner. I have following contig formats and I am running GenomeAnalysisTK:

sequence files numeric 1-22
reference file numeric 1-22

but the db file including genome SNP's chr1-chr22

My question is what is the best way to solve the problem and get all contigs into same format?

Many thanks!

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