Test-drive the GATK tools and Best Practices pipelines on Terra
Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.
I have such a basic question because I am beginner. I have following contig formats and I am running GenomeAnalysisTK:
sequence files numeric 1-22
reference file numeric 1-22
but the db file including genome SNP's chr1-chr22
My question is what is the best way to solve the problem and get all contigs into same format?