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Mutect Build: Java requirements
Hello GATK team,
I am having a hard time trying to build mutect from the github repository, following the instructions at:
Here are my questions:
1) What are the requirements for the java environment; i.e. does Mutect compile using OpenJDK or Sun JDK?
2) More specifically, I am getting the following error when running "mvn -Ddisable.queue install":
[ERROR] Failed to execute goal
com.pyx4j:maven-junction-plugin:1.0.3:link (link-public-testdata) on
project sting-aggregator: Can't create junction source
-> [/mnt/hn05_disk001/test/gatk-protected/public/testdata] -> [Help 1]