Holiday Notice:
The Frontline Support team will be slow to respond December 17-18 due to an institute-wide retreat and offline December 22- January 1, while the institute is closed. Thank you for your patience during these next few weeks. Happy Holidays!

HaplotypeCaller on few samples: cohort vs. by sample

mayaabmayaab IsraelMember ✭✭

Hello GATK team,
I would like to call variants using HaplotypeCaller.
I have few samples, and I wander, should I run them separately, or as a cohort of samples?

Thank you,


Sign In or Register to comment.