Heads up:
We’re moving the GATK website, docs and forum to a new platform. Read the full story and breakdown of key changes on this blog.
If you happen to see a question you know the answer to, please do chime in and help your fellow community members. We encourage our fourm members to be more involved, jump in and help out your fellow researchers with their questions. GATK forum is a community forum and helping each other with using GATK tools and research is the cornerstone of our success as a genomics research community.We appreciate your help!

Test-drive the GATK tools and Best Practices pipelines on Terra

Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.

Is the Oncotator source code available?

Geraldine_VdAuweraGeraldine_VdAuwera Cambridge, MAMember, Administrator, Broadie admin
edited June 2014 in Oncotator documentation

Yes, you can download the source code from our Github repository.

Note, however that Oncotator is covered by a specific license. Please check the terms of the license before downloading and/or using the source code.

In summary, academic users are not expected to pay for a license. If you use it for commercial purposes, please contact our partners at http://www.appistry.com/.

The license can be viewed https://github.com/broadinstitute/oncotator/blob/develop/LICENSE.

Also, please see the third-party software https://github.com/broadinstitute/oncotator/blob/develop/THIRD_PARTY_CODE_README.txt

Post edited by LeeTL1220 on
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