If you happen to see a question you know the answer to, please do chime in and help your fellow community members. We appreciate your help!
Test-drive the GATK tools and Best Practices pipelines on Terra
Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.
Is the Oncotator source code available?
Yes, you can download the source code from our Github repository.
Note, however that Oncotator is covered by a specific license. Please check the terms of the license before downloading and/or using the source code.
In summary, academic users are not expected to pay for a license. If you use it for commercial purposes, please contact our partners at http://www.appistry.com/.
The license can be viewed https://github.com/broadinstitute/oncotator/blob/develop/LICENSE.
Also, please see the third-party software https://github.com/broadinstitute/oncotator/blob/develop/THIRD_PARTY_CODE_README.txt