Is the Oncotator source code available?
Yes, you can download the source code from our Github repository.
Note, however that Oncotator is covered by a specific license. Please check the terms of the license before downloading and/or using the source code.
In summary, academic users are not expected to pay for a license. If you use it for commercial purposes, please contact our partners at http://www.appistry.com/.
The license can be viewed https://github.com/broadinstitute/oncotator/blob/develop/LICENSE.
Also, please see the third-party software https://github.com/broadinstitute/oncotator/blob/develop/THIRD_PARTY_CODE_README.txt