If you happen to see a question you know the answer to, please do chime in and help your fellow community members. We appreciate your help!
Test-drive the GATK tools and Best Practices pipelines on Terra
Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.
Does Oncotator support multicore processing?
Yes, Oncotator supports multicore processing, but only for the initialization of certain datasources (gene_tsv, gp_tsv, and transcript_tsv). If multicore functionality is activated (the default), Oncotator will initialize 4 separate processes for initializing datasources. Datasources without multicore support are initialized serially before the datasources that can be initialized in parallel.
For Broadies using Firehose:
Oncotator in Firehose does not use multicore processing. The
--no-multicore flag is specified in the Oncotator_v1 module.