Test-drive the GATK tools and Best Practices pipelines on Terra
Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.
ReadNameFilter 3.1 error
I was trying to use GATK ReadNameFilter as suggested on January 22nd in this thread:
However, --help does not list a tool named ReadNameFilter and I get this error, when I try to use it:
ERROR A USER ERROR has occurred (version 3.1-1-g07a4bf8):
ERROR MESSAGE: Invalid command line: Malformed walker argument: Could not find walker with name: ReadNameFilter
Am I going mad and/or is there some simple explanation?