ICGC-TCGA DREAM: Muetct L10 settings

Great to see Mutect L10 version doing well in the DREAM challenge. Could you please let me know what the Mutect-L10 setting are.

Thank you,
Teja

Answers

  • Geraldine_VdAuweraGeraldine_VdAuwera Cambridge, MAMember, Administrator, Broadie admin

    Hi Teja,

    As the DREAM challenge is ongoing, we can't provide the exact parameters used in that entry. Other teams are using MuTect with their own choice of settings, so if we published ours, we would lose the advantage. Of course, once the competition is over, we will be happy to publish the settings we used.

  • vyellapavyellapa Member

    Hi Geraldine,
    I see what youre saying. I'll wait a few days.

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