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Is it possible to have alleles for the two strands on vcf file obtained with Unified gentoyper ?
Hi GATK team,
Is it possible to have information for the two strands on the vcf file obtained with Unified gentoyper ? Because I know that my accessions are homozygous at each locus, and I would like to filter SNPs for which there is only one strand that have the alternative base. That would be for me a false SNP... So, first, are you okay with my idea, and is it possible to do this ?
Thanks in advance,