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GATK3.0 walker log output goes to stderr instead of stdout

tommycarstensentommycarstensen United KingdomMember ✭✭✭

I have noticed the walker logs being written to stderr instead of stdout. Is this a new feature or a bug? If I could vote against it, then I would. Unless there is a plan in the future to have GATK adhere to the Unix philosophy like SAMtools currently does; i.e. to operate on piped streams.

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