The frontline support team will be unavailable to answer questions until May27th 2019. We will be back soon after. Thank you for your patience and we apologize for any inconvenience!

GATK3.0 walker log output goes to stderr instead of stdout

tommycarstensentommycarstensen United KingdomMember ✭✭✭

I have noticed the walker logs being written to stderr instead of stdout. Is this a new feature or a bug? If I could vote against it, then I would. Unless there is a plan in the future to have GATK adhere to the Unix philosophy like SAMtools currently does; i.e. to operate on piped streams.


Best Answer


Sign In or Register to comment.