The current GATK version is 3.7-0
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Picard 2.10.4 has MAJOR CHANGES
that impact throughput of pipelines. Default compression is now 1 instead of 5, and Picard now handles compressed data with the Intel Deflator/Inflator instead of JDK.
GATK version 4.beta.3
(i.e. the third beta release) is out. See the github release
page for download and details.
Slides from the GATK workshop in Bangkok, 3-6 Mar 2014
This week, three lucky GATK team members are teaching an invited workshop at Mahidol University in Bangkok, Thailand! The slide decks for each day will be available at the start of the day here in the GSA dropbox. After the workshop, all materials will be available in the Presentations section of the GATK website as usual.