Test-drive the GATK tools and Best Practices pipelines on Terra
Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.
Optimal batch sizes for GenomeSTRiP
How large a batch of bam files would be recommended for 40x coverage with the latest version of GenomeSTRiP? Presently we would like to run this on about 65 bam files initially. For discovery, is the recommended best practice to run on all of them at once or split them into two smaller groups to keep the coverage below 2000x for a run?