Test-drive the GATK tools and Best Practices pipelines on Terra
Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.
is it reasonable to use splitted bam per chr to run mutect
for running mutect for whole genome sequencing data is pretty time-consuming, is it reasonable to first split bam file into per-chromosome-based smaller ones and then run mutect against per-chr bam file?
i am not quite sure whether mutect will use some cross chromosome information.