Test-drive the GATK tools and Best Practices pipelines on Terra
Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.
Genotype Quality scale
Does anyone know what is the upper scale (if there is one!) of the genotype quality score (GQ) in the format field? I know that sites with GQ < 20 are normally not reliable but was wondering what is the maximum limit seen as the mean of GQ for PASS variants in my study is around 90 and am considering that to be pretty good?
Thanks a lot!