Test-drive the GATK tools and Best Practices pipelines on Terra
Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.
RNA seq mapping
My question is on bwa software when one want to map RNA-seq data on the entire human genome. What should be the specific settings to use to get maximum mapping? Should it be effective if no options are used in the command line?
Thank you for your time