Test-drive the GATK tools and Best Practices pipelines on Terra
Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.
MuTect quality score
I have run MuTect on a couple of samples and looking at the VCF file ouput, I am wondering why the quality column is left empty (.).
I have some VCF files generated as part of TCGA which do contain a numerical value in the quality column.
Does anyone have an idea?