Test-drive the GATK tools and Best Practices pipelines on Terra


Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.

What is LDAF meaning?

Hello colleagues,

I'm newbie in VCF files and don't understand some information in it. What is LDAF tag meaning? Description says that it's "MLE Allele Frequency Accounting for LD", but as I understood, LD counts between two different loci. I'm sorry for my stupid question but how counts LD in this case?

Thank you!

Answers

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