Test-drive the GATK tools and Best Practices pipelines on Terra
Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.
I have been trying to get my hands on help docs or command line examples for the indelocator ...
It does not seem to have any support yet still part of the tool for cancer sample analysis.
Do you have any recommendations? If it is not recommended then why make it public?
Many of us would like to understand how to run it, we can probably do our own filtering on verbose output.