How To install Java Runtime Environment version 1.7 on Linux/Ubuntu?
This is not a GATK or even genomics-related question, so I would recommend searching (e.g. with Google) for a better place to get this information.
Thanks for your response . What is the recommended Linux type for GATK? i use Ubuntu (via virtual box) on top of windows...but i have a problem on install java 1.7
on Ubuntu to install GATK
Unfortunately that's not something I can help you with. We work mostly on MacOS X or Unix server environments, so we don't have experience with different Unix versions. Perhaps you can ask your institution's IT support people for help?
Thank you so much Geraldine