Test-drive the GATK tools and Best Practices pipelines on Terra
Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.
GATK for mitochondrial dna mutations
I was wondering whether it is possible to call low heteroplasmic variants with GATK. As many molecules of mtdna are present in one cell, you can find variants with a frequency of 1-100%. So I was wondering if I can detect variants of let say 4% using the GATK Unified genotyper?