CombineVariants output of multiple variants on separate lines?

DrSmithzensDrSmithzens Member
edited December 2013 in Ask the GATK team

When using CombineVariants on multiple vcf files (more than 100) is is possible to output multiple variants at the same position on separate lines. Eg. at position 1 reference is A and variants are either G or T. Can I get output for A to G and A to T on separate lines?

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