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I am using Genome STRiP in conjunction with other structural variant (SV) calling methods such as Breakdancer/Pindel to identify a list of SV calls based on Illumina sequence data from human. I would like to obtain a detailed QC matrix for each SV (including information about supporting reads, quality of reads, and statistical interface similar to generated by SVDiscovery as part of Genome STRip). Would it be possible to generate QC matrix for each SV call (genomic regions provided in .bed file) from bam file using SVDiscovery as part of Genome STRiP project?
Thanks for your help,