SNP cluster filter

Hi, When I was trying to filter clustered SNPs using the arguments --clusterWindowSize 50 ,
I feel the result is NOT what I expected. I want to filter out all 3 SNPs if these 3 SNPs exit within 100bp, that is-at least one SNP has another adjacent SNPs within 50bp up and down stream, but I only got the middle one annotated as snpCluster (the middle one), the other two SNPs up and down stream to it- just because they don't have any other adjacent SNPs.were not annotated. Isn't it true that all these 3 SNPs should be noted at "cluster"


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