Error after executing GATK tool
Hi, I am trying to run GATK tool on hadoop single node cluster. I have executed below command:
[email protected]:~/apps/hadoop$ bin/hadoop jar GenomeAnalysisTK.jar -T RealignerTargetCreator -I /usr/hduser/gatkinput/exampleBAM.bam -R /usr/hduser/gatkinput/exampleFASTA.fasta -o output.list
After executing the above command, I got exception which is attached in the file "'gatk error on hadoop VM.txt''. Please help me to resolve this issue.