Can GATK be used for for polyploids
I am new to this forum.. I wanted to know if i can use GATK UnifiedGenotyper for variant detection in polyploid like wheat. I am actually confused because i see it has ploidy setting but i donot find any reference for polyploids. Kindly, help me. Also plz give me the link where i can find a clear documentation about what workflow it has for variant detection.