combining samples from different platforms
We have a total of 5 exomes from 1 family. 3 of the exomes are sequenced at sanger and 2 at BGI. My first thought was to recall the variants for all 5 exomes at once. Doing this gives me a error message about the contigs. What would be the best way to recall the 5 samples at once? I have the .bam files from the 5 exomes.