Test-drive the GATK tools and Best Practices pipelines on Terra
Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.
Progres meter Variant calling
One can observe a progress meter when doing variant calling using HaplotypeCaller.
INFO 11:53:27,477 ProgressMeter - KE332547.1:3346983 8.24e+06 57.5 m 7.0 m 2.4% 39.4 h 38.4 h
What are the different columns ?
Especially, what is the 1:3346983 ?
Thanks a lot !
Post edited by Geraldine_VdAuwera on