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Why this mutation is REJECTED ?

JiantaoShiJiantaoShi BostonMember ✭✭


there is a record in my result that is rejected, can you explain a little bit to me ?

contig  chr4
position    87783694
context TTGxTTT
ref_allele  T
alt_allele  C
tumor_name  Tumor
normal_name Normal
score   0
dbsnp_site  NOVEL
covered COVERED
power   0.490543
tumor_power 0.490544
normal_power    0.999997
total_pairs 55
improper_pairs  7
map_Q0_reads    0
t_lod_fstar 9.969415
tumor_f 0.227273
contaminant_fraction    0.02
contaminant_lod -0.201545
t_ref_count 17
t_alt_count 5
t_ref_sum   551
t_alt_sum   127
t_ref_max_mapq  60
t_alt_max_mapq  60
t_ins_count 0
t_del_count 0
normal_best_gt  TT
init_n_lod  8.421617
n_ref_count 28
n_alt_count 0
n_ref_sum   862
n_alt_sum   0
judgement   REJECT


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