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percentBad parameter in VariantRecalibrator
flescai
Member
Hi there,
I do apologise in case this question has been answered already but I couldn't find an updated thread on it.
In my previous code I had a conditional based on the number of samples to modify the percentBad parameter in VariantRecalibrator.
Now I get an error from my scala code as if the value were not anymore a member of the class.
Checking again in the Best Practices and in the VariantRecalibrator documentation I can't find it anymore.
Could you confirm it's not used anymore? or am I doing something wrong?
cheers,
Francesco
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Best Answer
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Geraldine_VdAuwera
Cambridge, MAMember, Administrator, Broadie
Hi Francesco,
That argument has been deprecated in favor of -numBad; see the version release notes and technical docs for details.
Answers
Hi Francesco,
That argument has been deprecated in favor of -numBad; see the version release notes and technical docs for details.