Test-drive the GATK tools and Best Practices pipelines on Terra
Check out this blog post to learn how you can get started with GATK and try out the pipelines in preconfigured workspaces (with a user-friendly interface!) without having to install anything.
mRNAseq and SNPs call, how can we make this as good as possible?
I have worked some time on a mRNAseq set, single-end. Its a high quality set and lots of biological replicates (200+).
My question is, how could I best contribute to the methodology used for SNPs call in mRNAseq? What do we need tested to improve this method?