This site is now read-only. You can find our new documentation site and support forum for posting questions here.
Be sure to read our welcome blog!
Compare MuTect with VarScan 2 and other mutation callers
We recently compared MuTect with VarScan 2 and other mutation callers using validated data. Our results (at http://genomemedicine.com/content/5/10/91) showed MuTect missed some high-quality SNVs. I posted this paper here in a hope that the developers are aware of the pros and cons of MuTect in comparison with other tools.